Well I seem to be having this problem too as safemode and deleting the gameprefs.pref file isn't working and it seems to be that the graphics settings for DirectX 9 and 10 is the cause of it as I don't have this problem with Holodeck
Will Cryptic ever model the Enterprise from the 2009 Star Trek film along with the bridge, because the film is technically AU canon if you count prime Spock and the jellyfish.