I've encountered two issues. 1st one and a rather new one to me - transwarp to Alpha quadrant doesn't work. Neither to Bajor nor to Defera. I click "transwarp" and nothing happens. The 2nd bug is older than my granny and is STILL around - autonavigate in sector space is broken. The ship can't turn on it's own. Please please please just fix that, it's exctremely annoying to see that old drama being here for ages! Thnx.
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Number 2: Yeah very old, and I don't think they gonna ever fix it. It's very random though, most of the times it works (at least for me) but sometimes it's just going in a straight line no matter where the destination is, eventually bumping against an edge of the map.
2. Yeah, that's what happens frequently to me. I hoped it will get fixed in the next patch... and next one... and next one... But it never happened, sadly
At some later stage, they 'broke' them and now they require Transwarp Coils, but they need to fix them so that they don't.
Additionally, the Federation got a Transwarp to Mempa Sector that deposits them at Vulcan and KDF got a Transwarp to Vulcan that deposits them at Mempa. The destinations are correct, but the names are the wrong way around and this hasn't been fixed after all these years either...
Could it be possible that you're looking at the wrong one?
Defera has an transwarp under Alpha Quadrant as well as an separate Defera one section.
The first one needs the transwarp coil, the second one doesn't need one.