According to a developer post in a thread a while ago it's been stated missions were reworked to reward unclaimed duty officers on replay for those who'd started playing before the first patch. In replaying the mission "Facility 4028" to claim the previously absent Dominion Cadre I was not given their crate upon completion of the mission.
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All That Glitters for EMH - Works
Facility 4028 for Dathan, Omet'Etan and Kudak'ika - Doesnt
A New Warfare for J'Tenall - Doesnt
Time in a Bottle for Somog - Doesnt
Unable to check Mine Enemy for Rai due to insufficient Diplomacy level.
We just got DOFFs yesterday on console
I do apologise for my oversight.
In addition to the two mentioned by aceje088. A new Warfare worked fine for me on PS4, so I only need the Facility 4028 and Time in a Bottle ones fixed.
This is by replaying the missions, not doing them for the first time.
I'll have to check on Raj in mine enemy as aceje088 stated since they didn't have diplomacy &/or likely didn't want to disband Raj on their Romulan's to find out they couldn't get them back.
Although my main who is a Federation Engineer had disbanded 2 Gem Hedar Duty officer's but not Dathan so I can certainly rerun that mission to see if re-adds mission duty officers Omet'Etan and Kudak'ika to my crew & will post if it does.
Common Duty Officer from "Lost City of Paradise"
Law from "Fist Full of Gorn"
J'Tenali from "A New Warfare"
EMH Mk I from "All That Glitters"
I can also confirm that these aren't in the end rewards last I replayed...
Dominion Cadre from "Facility 4028"
Somog from "Time in a Bottle"
I can't confirm, Diplomacy is sadly low...
Rai from "Mine Enemy"
The only duty officers I have from mission rewards are those I comfirmed receiving, I don't have any of the others.
I didn't have any Vorta, or Jem'hadar, in my Duty officer Roster...
Now we'll just need to be a little patient & hope outstanding missions are corrected soon.