Misaligned parts after skeleton update to Research Science Vessel

cobra5000

When the skeleton rig was updated for the Nobel Miracle Worker Science Vessel [T6], it seems like some of the saucer sections became misaligned with their corresponding hull pieces.  I've attached some images showing what I believe to be broken connections currently.
In these images, I've tried to outline the following:

1. Outlined in RED is the line/shape of the HULL piece
2. Outlined in YELLOW is the line/shape of the SAUCER piece