This has been especially a problem with my Jem hadar char in the mission stranded in space. Customer support told me to submit my incident ID here to investigate the bug. Thanks!
In the Star Trek Online launcher, in the Options section, have you turned off On Demand Patching, turned on Force Verify, and then clicked on Save? After that wait until it is patched all the way. When assets on maps are being populated through On Demand Patching this is what usually causes the game to keep crashing in space maps. Thanks.
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Sorry it did not work.