Since the AoD update launched I am unable to replay missions. I've been trying to replay A Step Between Stars to get my third EV suit but when I click hail it just says "Input request" with the option to exit. Some missions are replayable others are completely greyed out with no option to select anything.
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Doing this should get you to where you were in the line itself.
As for played featured episodes, things change and it seems now you must skip/do all the way up to those missions in order to replay. However now you can skip more missions. (Some missions are still mandatory though for advancing via the official quest line.)
Some non accurate, non complete and non official further notes:
Some other missions might not be replayable anymore or have some temporary issues with replaying (collecting missions in Vestam, Atlay, Paehos, Hawel in NR zone, and Nimbus III/Wasteland missions on some cases.)
Some previous lines/parts of lines now added to wrappers (Spectres, Nimbus III/Wasteland, Lost Dominion 2800, Cold War), and those, beside Nimbus III/Wasteland, now requiring (Galaxy at large for feds and) level 65. At that point you may possibly find more things in available tabs and will have to visit some specific locations in order to start each those wrapper missions, which will be done quest by quest for the 1st play.
(Nimbus III/Wasteland should be available to those who have visit Nimbus III area (replay might be problematic/missing though), but fed characters should ALSO get and do "Galaxy at Large" quest in Klingon's War line before that, by talking to Quinn.)
There are subtleties here regarding level requirements which were eased/removed on most things (yet some old lines/parts of lines (the wrappers) which are for now outside the official lines now require level 65, as said.) and TFOs. Some removed missions may come back, changed/renewed, later.
I (a player) and other people think this change (mission jurnal streamlining) affected objective of some delta and temporal recruits (by the removal of some missions and probes/orbs in those), but we hope it will be addressed later as reports will accomolate/add and more info will be gathered and known.