Same problem here with my Microsoft Sidewinder Standard Analog joystick. It worked before the Season 9 update, now it doesn't. I use it during space flight. I tried to re-map the x,y axis, but no luck. Hope they fix it soon.
Please don't flame me if this has already been asked/answered, but I don't have time to read through 28 pages of posts. Will this pre-patch destroy my Federation character I already have in STO? I would like to know before I download it. Thank you.