Switching Ships not using load outs

I have seven different ships setup, one for each damage type to run endeavors. They all use the same Warp Core, Impulse Engines, Shields, Deflector, & several consoles. Almost every time I switch from one ship to another, these shared items are greyed out and it will not use the loadout. I've tried making a second loadout and when this happens, it will not let me switch between the two. I can manually add these items back and then save the loadout but then it usually happens again once I switch to another ship. I thought I had figured out a work around by switching maps then switching ships so it uses the load out but that hasn't been consistent. Is there a work around or combination of things that can be done to have the ship grab the load out?