As the topic says. I tried filing a bug report, I was told it was sent to devs, but absolutely nothing has been done. This is actually affecting my gameplay and causing performance issues because I end up in TFOs without important traits. Sometimes, when I move from one map to another, it just randomly removes traits, usually the ones set more recently, though sometimes it'll randomly drop whatever traits it feels like dropping. This happens no matter how long I have had the traits set, and my ship has not changed (though when I do change ships, all my traits disappear completely, which I suspect is a different bug altogether.) I can't remember to check my traits every single time I change maps and don't want to hold back teams by going in traitless.
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Change ship, sort the loadout, save loadout.
Get into system space (sector space usually breaks stuff), sort boffs, traits etc then save loadout again.
Then double check, go into a patrol and check once more.
90% of the time it works all the time. The issue usually pops up on new ships if it does at all, and I've noticed it happens more swapping ship types as well.
(Flaming/trolling comments moderated out. - BMR)
Many I know don't have a problem, yet you definitely want to save a Ship Loadout while in Space; especially for each new Ship you regularly fly. Everyone is given at least two free Loadouts, yet you can purchase more to quickly swap Gear. That's the first thing you should do to ensure your Traits are saved. Then only once in a blue moon will it loose, or randomly change them. If it does change something ensure their updated, and save the Loadout again in Space.
That's the BEST advice I'd give. Sorry I wish I could help more!