on some of my characters shuttles disappear from being active. if i dismiss the shuttle and claim it it is available again but disappears again when i log out.
I have a similar issue, seems to effect my temporal recruits if I choose a store bought shuttle instead like the delta flyer of the game provided one. On the mission "The Vault" I have to manually change into the shuttle and then reassign skills and pilots and when I finish the mission i have to change manually back into the starship. At ship management the small craft does not appear in the readied ships and you cannot customize the shuttle-craft unless you are actually flying it.
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