When they release a T6 version of this ship, which, as we all know, is bound to happen eventually, I have a totally OP suggestion.
Picking up where the old version had each part of the ship have a slightly different role, DPS/tank/sci, how about they assign a different spec seat to each ship part?
One for command, one for intel and one for pilot while the seat would turn into a standard universal when not seperated.
And when using set consoles, each NPC driven ship section would retain some of it's spec abilities of course.

So the question is this: How OP would this actually be? XD
Disclaimer: this thread is not (entirely) meant to be taken seriously.
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So my guess is CMDR Tac, LTC Tac/Command, LTC Sci, Lt Eng, Ens Tac (possibly uni).
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Does the Advaned Escort/MVAM actually change the BOFF layout on separation?
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Does the Advaned Escort/MVAM actually change the BOFF layout on separation?[/quote]
No the boff layout stays the same only hull/shields and sub system power is different depending on the component you are flying
I see. But I doubt they do that because they could have included the gimmick in all separating ships since the Dyson as well, the forum crowd suggested that a lot but they did nothing like that. They maybe now, but I can't see the Prometheus of all ships get such super special treatment.
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Though I could see full versatility like this coming at the cost of having to equip 3 different consoles for it with a general set bonus of course.
The sections need to made stronger (both HP and firepower) because of the new content, equivalent or more of the Fed battleship NPC. With access to Attack patterns, FAW, TS and heals would be quite nice.
Also having control over those pets is something that the MVAE users is asking for a long time.
I mean, it's the Prometheus, it should be a bit OP
People are, of course, going to cry tears of blood (as they always do, for everything in this game), but it's a unique and novel suggestion to the problem of being "trapped" in a Spec.
If they plop down a Command seat into it, as all indications currently point to, I guarantee you that it will not sell well.
"Rumour" is they event changed it from Pilot to Command.
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But releasing a Tier 6 version might be an opportune time. Specialization Changes depending on what mode you fly could be a sales point.
I think the biggest hurdle would be how practical the changes are. If the slots already are partially on the base ship, you would have to change your loadout aftewards to really benefit from it.
But maybe it could be done with a simpler build... Say
But I doubt it is going to happen.