Mods on weapons do not reflect on the ship stat sheet, because the mods on the weapons themselves only apply to that weapon, not the entire ship.
As for changes in the ship stat sheet for accuracy, many things could have happened to alter it. Everything from ship equipment, bonus, set bonus, traits, etc.
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As for changes in the ship stat sheet for accuracy, many things could have happened to alter it. Everything from ship equipment, bonus, set bonus, traits, etc.