No matter where you are in this mission, the autopilot will always take you to Galorndon Core, despite the fact that multiple other space areas are mission targets (including a return to the flotilla at the end of the mission).
This isn't a bug, it is the behavior of the button. It has always, since it's first appearance, taken you to the first location in the mission (in this case, Galorndon Core). It wasn't intended to take you to subsequent locations. That being said, I would like to see that changed. Navigating sector space is tedious enough with the current map layout (Moving the "System List" to the "Current Map" would be a start there...)
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