On the missions Secound Wave and Operation Gamma. Garak and Wayouns cutscean dialog overlaps with the old dialog from before they were added to the game.
There are several of those another is on Nimbus with Hassan the Undying (Although I did kill him in the end) just after you win the arena and he comes to deal with you himself there is a double voice over.
There are a couple more but it slipped my mind where they are right at this moment.
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There are a couple more but it slipped my mind where they are right at this moment.