I recently made it to Commander, and when purchasing the new Heavy Cruiser ship (tier 3) I chose the Stargazer class variant (tier 3), but it gave the Cheyenne class (tier 3) instead. I know this is a cosmetic thing, but the style of the ship really helps with getting into the atmosphere and immersing into the character of the game.
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However, the Stargazer class requires the use of Zen, which means you'll have to part with some $$$.
Alternatively, you could just spend your time amassing enough dilithium to convert it to Zen in the dilithium exchange.
By the time you get enough though, you'll have likely out-levelled the ship and you'll be on your next one.