I noticed that when using History Will Remember, I was getting stacks impossibly fast (according to the tooltip)... as in being at 14 stacks after taking out the first two ships in Argala... then I noticed that it was only happening when I use ships with Pilot BOFFs.
After carefully watching, it appears that the Damage-Over-Time caused by "Fly Her Apart" is generating a stack on every tick.
According to HWR's tooltip, it should only generate one stack per unique damage source.
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Go tank Swarm and you'll have max stacks in 2 sec.
Go attack Crystaline entity only and you will not get more than 1 if you apply an entity-only tactic.