Some of these bugs were introduced with "Legacy of Romulus". Some are longstanding bugs that have never been fixed. Most were reported on the Tribble forums while "Legacy of Romulus" was in beta and are now live on Holodeck.
Soft boots are no longer available for males
http://sto-forum.perfectworld.com/showthread.php?t=698981http://sto-forum.perfectworld.com/showthread.php?t=702721
Problems with saved costume files
http://sto-forum.perfectworld.com/showthread.php?t=661331http://sto-forum.perfectworld.com/showthread.php?t=661321
Armor parts show for uneditable boffs
http://sto-forum.perfectworld.com/showthread.php?t=675991
Incorrect tooltips on reset and randomize buttons
http://sto-forum.perfectworld.com/showthread.php?t=645241
Linked colors
http://sto-forum.perfectworld.com/showthread.php?t=645251
Waiting for a programmer ...