So what do you think which species annoys you the most?
Personally, I think Fek'Ihri are quite annoying. They make some funny noise which takes powers out of your ship systems. Then their frigate can cloak which forces you to change the target till they decloak.
But nevertheless, it is fun to kill them as well
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The breen i seem to remember are pretty tough in 'no win' as one of their abilities makes the freighters shields drop.
Actually, the Fek'lhri aren't using cloaks. That's the Jam Sensors ability. It makes the enemy disappear from your screen until they've done enough damage to you to negate it, or until the timer runs out. It's irritating nonetheless, but it can be cleared with Sci Team (which is only really practical on cruisers and sci BoPs).
Their fighters make kamikaze runs. Which sucks.
Their frigates drop tricobalt mines. Which sucks even more.
Their escorts fire tricobalt torpedoes and can phase shift, which makes them untargetable. Which sucks most of all.
Their battleships can launch fighters and dump their warp plasma into your engines. Which sucks almost as much as the phase shifting.
Their dreadnoughts can teleport (or something). Which sucks as well.
Breen are tricky as well, though at least I can actually shoot at them (unlike those Fek'Ihri escorts...)
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In space? To be honest I don't see enough of anything other than Klingons at the minute to tell you sadly.
Personally, I hate the ones with tractor beams. They slow down the freighters, so no matter how well you play, it's usually impossible to do better than 18.
The escorts use a sort of phase cloak (the player carrier has one as a console). they can still fire energy weapons bit cant be targeted.
Ah, thanks for the clarification. I've seen 'em go completely invisible via the Jam Sensors ability, I think.