I finished the opening tutorial and I docked at the staion and when I loaded in I was still my ship. I tried to do a bug report but the server went down.
Similar issue here when beaming to another ship for a mission, I am assuming it has to do with the game not being able to retrieve the characters prior to the crash so it just kinda plopped my ship in with 2 redshirts as a landing party.
I would expect this to be database lag at the server side, what it sounds like is its not sending your client the avatar data. which suggests to me that the server that handles everything related to where you are, what should load etc is having problems with all the requests from people. I suggest a relog but i dont know if it would help in this 'Climate'
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http://i5.photobucket.com/albums/y174/AntandShanie/screenshot_2010-01-12-21-06-06.jpg
I pressed W and the ship kindof crashed into the floor then my character suddenly appeared and everything was back to normal.