While leveling up my Jem'Hadar character (Aran'tikar@NCC-89471) through the New Romulus Reputation, I have unlocked two special missions: "Secret Shuttle Codes" (New Romulus: Mountain Base) at Tier II, and "Web Access" (New Romulus: Overgrown Caves) at Tier III. [There's also "Secrets of the Ancients" (New Romulus: Hwael Ruins) at Tier V but I have not unlocked that one yet.] However, these missions require the player to either contact a specific NPC at their respective locations, or find the mission in the mission journal to begin the missions; and neither of these options are available to Jem'Hadar player characters. (The entire New Romulus section of the mission journal is grayed out, and neither of the specified NPCs have those missions available when I contact them.) Furthermore the Drop button is grayed out for both these missions, so I can't remove them from my to-do list either.
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I've been a bit slow at levelling it and am only just approaching the end of the "Klingon War" arc. I reckon the necessary missions will unlock once I reach them on playing through.
Go to the romulan ambassador at your faction HQ, ie ESD for fed (Admiral Quinn's office).
You'll get a quest pointing you at New Romulus, after which you get the next quest in the chain autobestowed...etc...etc
Eventually you get the quests for those instances you need to do those other quests you alrdy got.