Do the personal traits like Cannon Training also affect pets that also use cannons? Or does Beam Training affect pets that use beams? For instance, if my pets use beams, should I also use beams, and run Beam Training to affect both of us? Thank you.
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The Wiki is a little bit lacking in info on this as pertains to the Galaxy Saucer Pet, but for the MVAM Pets it is pretty specific in saying that the pets will all use standard phaser beams, no matter what is equipped on the ship. Engine/Shield/Deflector transfers, or at least visual effects do, but that's about it.
No specific mention of if Traits do or do not, generally, effect these pets. Perhaps some testing would be in order... As to how to set that up accurately, I leave to those who might have experience in this area.
The Breen carrier has a ship mastery trait that sends some of your self healing to your pets. I think there are other ship traits like that.
The personal space and rep traits? I'm pretty sure those only affect your own ship too, except area effect ones like the green shield bubble.